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prot-HIV-p17d
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1995-03-07
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754 lines
#Three-dimensional structure of the HIV-1 matrix protein p17.
#
#This molecular structure was recently determined by nuclear
#magnetic resonance (NMR) at Oxford University.
#
#Contributed by doak@bioch.ox.ac.uk
#
#Further details and reference in file comments.
#
#dots added by craig@raru.adelaide.edu.au 24 Sep 94
#The human immunodeficiency virus (HIV) matrix protein, p17, forms the outer
#shell of the core of the virus, lining the inner surface of the viral membrane. The
#protein has several key functions. It orchestrates viral assembly via targeting
#signals that direct the gag precursor polyprotein, p55, to the host cell membrane
#and it interacts with the transmembrane protein, gp41, to retain the env
#-encoded proteins in the virus. In addition, p17 contains a nuclear localisation
#signal that directs the pre-integration complex to the nucleus of infected cells.
#This permits the virus to infect productively non-dividing cells, a distinguishing
#feature of HIV and other lentiviruses. We have determined the solution
#structure of p17 by nuclear magnetic resonance (NMR) with a root-mean
#square deviation for the backbone of the well defined regions of 0.9≈. It consists
#of four helices connected by short loops and an irregular, mixed beta sheet that
#provides a positively charged surface for interaction with the inner layer of the
#membrane. The helical topology is unusual; the Brookhaven protein database
#contains only one similar structure, that of the immune modulator
#interferon-gamma.
#
#Stephen Matthews, Paul Barlow, Jonathan Boyd, Geoff Barton, Robert
#Russell, Helen Mills, Mark Cunningham, Nicola Meyers, Nigel Burns, Nigel
#Clark, Susan Kingsman, Alan Kingsman and Iain Campbell.
#
#Reference: Nature, 370:666-668, 1994.
#
#See also: http://nmra.ocms.ox.ac.uk/
#
#The xyz coordinates in this file were generated from a pdb file using a simple perl
#script. I have found Craig Kloeden's Rotater program to be an excellent,
#cheap (free!) method of displaying protein structures on my Mac.
#
# D.Doak
#
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